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Structure of the arginase-2-inhibitory human antigen-binding fragment Fab C0021144
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 200 mM NH4Cl
20% PEG3350
Crystal Properties Matthews coefficient Solvent content 3.28 62.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 172.69 α = 90 b = 172.69 β = 90 c = 211.26 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2018-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.979500 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 49.901 100 0.36 0.066 1 7.6 29.5 47369
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.48 99.9 9.9 10.19 2.226 0.35 0.4 20.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.4 49.901 47369 2368 99.924 0.207 0.2051 0.2051 0.2413 0.2414 62.969
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.011 -0.506 -1.011 3.281
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.574 r_dihedral_angle_4_deg 22.303 r_dihedral_angle_3_deg 18.87 r_dihedral_angle_1_deg 8.762 r_lrange_it 6.475 r_lrange_other 6.475 r_scangle_it 3.812 r_scangle_other 3.812 r_mcangle_it 3.692 r_mcangle_other 3.692
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.574 r_dihedral_angle_4_deg 22.303 r_dihedral_angle_3_deg 18.87 r_dihedral_angle_1_deg 8.762 r_lrange_it 6.475 r_lrange_other 6.475 r_scangle_it 3.812 r_scangle_other 3.812 r_mcangle_it 3.692 r_mcangle_other 3.692 r_scbond_it 2.369 r_scbond_other 2.369 r_mcbond_it 2.278 r_mcbond_other 2.262 r_angle_refined_deg 1.769 r_angle_other_deg 1.232 r_symmetry_nbd_other 0.188 r_nbd_refined 0.187 r_nbd_other 0.181 r_symmetry_nbd_refined 0.178 r_nbtor_refined 0.165 r_xyhbond_nbd_refined 0.143 r_symmetry_xyhbond_nbd_refined 0.102 r_ncsr_local_group_1 0.101 r_ncsr_local_group_2 0.09 r_symmetry_nbtor_other 0.08 r_chiral_restr 0.069 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6489 Nucleic Acid Atoms Solvent Atoms 78 Heterogen Atoms 126
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing Coot model building