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A4V MUTANT OF HUMAN SOD1 WITH EBSELEN DERIVATIVE 6
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UXM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.6 293 2.6 M Ammonium sulphate, 100 mM Tris-HCl pH 7.6, 150 mM NaCl
Crystal Properties Matthews coefficient Solvent content 4.38 71.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.663 α = 90 b = 195.546 β = 98.08 c = 76.34 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2018-10-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9159 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.77 97.77 100 0.171 0.205 0.111 0.972 4.7 3.3 41466 46.637
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.77 2.88 100 0.665 0.795 0.431 0.674 1.9 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1UXM 2.77 97.08 36964 1851 93.55 0.2129 0.2112 0.2288 0.2438 RANDOM 44.464
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.76 1.66 -1.66 2.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.452 r_dihedral_angle_4_deg 24.467 r_dihedral_angle_3_deg 15.509 r_dihedral_angle_1_deg 12.397 r_mcangle_it 4.479 r_mcbond_it 2.632 r_mcbond_other 2.631 r_angle_other_deg 2.408 r_angle_refined_deg 1.295 r_chiral_restr 0.042
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.452 r_dihedral_angle_4_deg 24.467 r_dihedral_angle_3_deg 15.509 r_dihedral_angle_1_deg 12.397 r_mcangle_it 4.479 r_mcbond_it 2.632 r_mcbond_other 2.631 r_angle_other_deg 2.408 r_angle_refined_deg 1.295 r_chiral_restr 0.042 r_bond_other_d 0.037 r_gen_planes_other 0.009 r_gen_planes_refined 0.008 r_bond_refined_d 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6672 Nucleic Acid Atoms Solvent Atoms 240 Heterogen Atoms 330
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction DIALS data reduction MOLREP phasing