X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1UXM 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.62932.6 M Ammonium sulphate, 100 mM Tris-HCl pH 7.6, 150 mM NaCl

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 112.506α = 90
b = 194.658β = 96.97
c = 75.169γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2018-10-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-10.9159DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9797.3399.20.0810.0980.0540.9936.72.911178524.333
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.97295.50.4230.5640.370.7761.62

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1UXM1.9797.33106012574899.110.18470.18250.2252RANDOM30.599
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.030.49-2.051.9
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.128
r_dihedral_angle_1_deg14.218
r_dihedral_angle_3_deg12.681
r_dihedral_angle_4_deg11.503
r_mcangle_it3.377
r_angle_other_deg2.426
r_mcbond_it2.276
r_mcbond_other2.275
r_angle_refined_deg1.566
r_chiral_restr0.066
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.128
r_dihedral_angle_1_deg14.218
r_dihedral_angle_3_deg12.681
r_dihedral_angle_4_deg11.503
r_mcangle_it3.377
r_angle_other_deg2.426
r_mcbond_it2.276
r_mcbond_other2.275
r_angle_refined_deg1.566
r_chiral_restr0.066
r_bond_other_d0.037
r_bond_refined_d0.024
r_gen_planes_refined0.007
r_gen_planes_other0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6666
Nucleic Acid Atoms
Solvent Atoms1015
Heterogen Atoms336

Software

Software
Software NamePurpose
REFMACrefinement
Aimlessdata scaling
PDB_EXTRACTdata extraction
DIALSdata reduction
MOLREPphasing