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A4V MUTANT OF HUMAN SUPEROXIDE DISMUTASE 1 WITH EBSELEN BOND IN C2 SPACE GROUP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UXM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 100 mM Tris-HCl pH 7.4-8.0, 2.4-2.6 M ammonium sulphate, 150 mM NaCl
Crystal Properties Matthews coefficient Solvent content 4.3 71.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.313 α = 90 b = 195.237 β = 97.86 c = 75.348 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER R 4M 2018-08-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E 1.54179
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 47.25 97.3 0.084 0.996 10.3 3.5 70706
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.3 97.7 0.46 0.639 1.9 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1UXM 2.25 43 70706 3894 98.31 0.18781 0.1859 0.2164 0.2223 0.2449 RANDOM 18.461
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.48 -0.28 -0.1 0.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.831 r_dihedral_angle_4_deg 17.083 r_dihedral_angle_3_deg 14.612 r_dihedral_angle_1_deg 8.101 r_angle_refined_deg 1.476 r_mcangle_it 1.36 r_angle_other_deg 1.283 r_mcbond_it 0.768 r_mcbond_other 0.768 r_chiral_restr 0.064
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.831 r_dihedral_angle_4_deg 17.083 r_dihedral_angle_3_deg 14.612 r_dihedral_angle_1_deg 8.101 r_angle_refined_deg 1.476 r_mcangle_it 1.36 r_angle_other_deg 1.283 r_mcbond_it 0.768 r_mcbond_other 0.768 r_chiral_restr 0.064 r_gen_planes_other 0.013 r_gen_planes_refined 0.011 r_bond_refined_d 0.008 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6672 Nucleic Acid Atoms Solvent Atoms 812 Heterogen Atoms 175
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction AUTOMAR data reduction Aimless data scaling MOLREP phasing