X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1UXM 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP293100 mM Tris-HCl pH 7.4-8.0, 2.4-2.6 M ammonium sulphate, 150 mM NaCl
Crystal Properties
Matthews coefficientSolvent content
4.3571.75

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 112.6α = 90
b = 195.96β = 97.1
c = 75.68γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER R 4M2018-06-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-10.91587DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6597.9899.590.0660.0790.0420.99811.43.4194504
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.651.6899.51.0081.1880.6250.4651.23.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1UXM1.6597.98183807969799.550.17020.16890.196RANDOM24.098
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.15-0.16-0.740.61
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.714
r_dihedral_angle_4_deg16.078
r_dihedral_angle_3_deg12.904
r_dihedral_angle_1_deg7.201
r_mcangle_it2.699
r_angle_other_deg2.395
r_mcbond_it1.748
r_mcbond_other1.743
r_angle_refined_deg1.487
r_chiral_restr0.072
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.714
r_dihedral_angle_4_deg16.078
r_dihedral_angle_3_deg12.904
r_dihedral_angle_1_deg7.201
r_mcangle_it2.699
r_angle_other_deg2.395
r_mcbond_it1.748
r_mcbond_other1.743
r_angle_refined_deg1.487
r_chiral_restr0.072
r_bond_other_d0.037
r_bond_refined_d0.009
r_gen_planes_refined0.008
r_gen_planes_other0.008
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6672
Nucleic Acid Atoms
Solvent Atoms1374
Heterogen Atoms101

Software

Software
Software NamePurpose
REFMACrefinement
DIALSdata reduction
Aimlessdata scaling
MOLREPphasing