☰ Navigation Tabs
A4V MUTANT OF HUMAN SUPEROXIDE DISMUTASE 1 IN C2 SPACE GROUP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UXM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 100 mM Tris-HCl pH 7.4-8.0, 2.4-2.6 M ammonium sulphate, 150 mM NaCl
Crystal Properties Matthews coefficient Solvent content 4.35 71.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.6 α = 90 b = 195.96 β = 97.1 c = 75.68 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER R 4M 2018-06-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.91587 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 97.98 99.59 0.066 0.079 0.042 0.998 11.4 3.4 194504
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.68 99.5 1.008 1.188 0.625 0.465 1.2 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1UXM 1.65 97.98 183807 9697 99.55 0.1702 0.1689 0.1784 0.196 0.2005 RANDOM 24.098
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.15 -0.16 -0.74 0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.714 r_dihedral_angle_4_deg 16.078 r_dihedral_angle_3_deg 12.904 r_dihedral_angle_1_deg 7.201 r_mcangle_it 2.699 r_angle_other_deg 2.395 r_mcbond_it 1.748 r_mcbond_other 1.743 r_angle_refined_deg 1.487 r_chiral_restr 0.072
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.714 r_dihedral_angle_4_deg 16.078 r_dihedral_angle_3_deg 12.904 r_dihedral_angle_1_deg 7.201 r_mcangle_it 2.699 r_angle_other_deg 2.395 r_mcbond_it 1.748 r_mcbond_other 1.743 r_angle_refined_deg 1.487 r_chiral_restr 0.072 r_bond_other_d 0.037 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_gen_planes_other 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6672 Nucleic Acid Atoms Solvent Atoms 1374 Heterogen Atoms 101
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling MOLREP phasing