☰ Navigation Tabs
AntDE:AntF (apo): type II PKS acyl-carrier protein in complex with its ketosynthase bound to the hexaketide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6SM4 6SM4, 1TQY experimental model PDB 1TQY 6SM4, 1TQY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.2 293 0.1 M BIS-TRIS, 0.4 M (NH4)2SO4, 29% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.29 46.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.65 α = 90 b = 107.65 β = 90 c = 201.33 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2016-04-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 98.2 0.123 0.99 8.8 2.9 61596
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.8 0.59 0.663 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6SM4, 1TQY 2.7 30 58463 3077 98.16 0.2289 0.2257 0.2255 0.2648 0.2687 RANDOM 42.297
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.89 0.89 -1.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.702 r_dihedral_angle_3_deg 13.664 r_dihedral_angle_4_deg 10.997 r_dihedral_angle_1_deg 5.196 r_angle_refined_deg 1.187 r_angle_other_deg 1.1 r_rigid_bond_restr 0.149 r_chiral_restr 0.035 r_bond_refined_d 0.002 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.702 r_dihedral_angle_3_deg 13.664 r_dihedral_angle_4_deg 10.997 r_dihedral_angle_1_deg 5.196 r_angle_refined_deg 1.187 r_angle_other_deg 1.1 r_rigid_bond_restr 0.149 r_chiral_restr 0.035 r_bond_refined_d 0.002 r_bond_other_d 0.002 r_gen_planes_refined 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 17923 Nucleic Acid Atoms Solvent Atoms 144 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XSCALE data scaling PHASER phasing