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AntF (holo): type II PKS acyl-carrier protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6SM4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1 M citric acid, 3.2 M (NH4)2SO4
Crystal Properties Matthews coefficient Solvent content 3.7 66.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.08 α = 90 b = 59.08 β = 90 c = 151.23 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2016-06-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 99 0.054 0.999 18.2 5.3 11070
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.5 99.9 0.494 0.943 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6SM4 2.4 15 10411 548 98.52 0.1902 0.1883 0.1998 0.2266 0.2366 RANDOM 60.157
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.16 1.16 -2.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.792 r_sphericity_free 17.825 r_dihedral_angle_4_deg 16.931 r_dihedral_angle_3_deg 13.362 r_sphericity_bonded 8.589 r_dihedral_angle_1_deg 4.304 r_rigid_bond_restr 1.159 r_angle_refined_deg 1.012 r_angle_other_deg 1.005 r_chiral_restr 0.065
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.792 r_sphericity_free 17.825 r_dihedral_angle_4_deg 16.931 r_dihedral_angle_3_deg 13.362 r_sphericity_bonded 8.589 r_dihedral_angle_1_deg 4.304 r_rigid_bond_restr 1.159 r_angle_refined_deg 1.012 r_angle_other_deg 1.005 r_chiral_restr 0.065 r_bond_refined_d 0.006 r_bond_other_d 0.003 r_gen_planes_refined 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1264 Nucleic Acid Atoms Solvent Atoms 27 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XSCALE data scaling REFMAC phasing