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Mutations in SsgB correlate to longitudinal cell division during sporulation of Streptomyces coelicolor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3CM1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 291 0.2 M Sodium chloride, 0.1 M Sodium/potassium phosphate (pH 6.2), 50% PEG200
Crystal Properties Matthews coefficient Solvent content 3.98 69.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 155.471 α = 90 b = 155.471 β = 90 c = 53.753 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.975 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.27 109.927 95.5 0.065 0.076 0.037 0.979 9.4 4 33694 47.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.27 2.309 92.1 1.009 1.167 0.57 0.477 1.1 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3CM1 2.3 49.213 27417 1349 94.918 0.21 0.2081 0.2165 0.2556 0.2634 62.539
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.959 -2.959 5.918
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.205 r_dihedral_angle_4_deg 19.327 r_dihedral_angle_3_deg 14.479 r_lrange_other 14.014 r_lrange_it 14.005 r_scangle_it 9.081 r_scangle_other 9.014 r_mcangle_it 7.916 r_mcangle_other 7.916 r_dihedral_angle_1_deg 7.618
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.205 r_dihedral_angle_4_deg 19.327 r_dihedral_angle_3_deg 14.479 r_lrange_other 14.014 r_lrange_it 14.005 r_scangle_it 9.081 r_scangle_other 9.014 r_mcangle_it 7.916 r_mcangle_other 7.916 r_dihedral_angle_1_deg 7.618 r_scbond_it 5.95 r_scbond_other 5.908 r_mcbond_it 5.247 r_mcbond_other 5.244 r_angle_refined_deg 1.413 r_angle_other_deg 1.252 r_symmetry_nbd_refined 0.218 r_nbd_other 0.211 r_symmetry_nbd_other 0.193 r_nbd_refined 0.183 r_nbtor_refined 0.154 r_xyhbond_nbd_refined 0.154 r_ncsr_local_group_3 0.109 r_ncsr_local_group_2 0.106 r_ncsr_local_group_1 0.103 r_symmetry_nbtor_other 0.081 r_chiral_restr 0.058 r_symmetry_xyhbond_nbd_refined 0.037 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2871 Nucleic Acid Atoms Solvent Atoms 136 Heterogen Atoms 131
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing