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Moringa seed protein Mo-CBP3-4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 293 0.1M citic acid
2.4M sodium formate
Crystal Properties Matthews coefficient Solvent content 3 58.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.07 α = 90 b = 108.07 β = 90 c = 43.62 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2013-11-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.99 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.68 54.45 99.6 0.035 0.02 24.7 7.1 15156 27.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.68 1.71 95.5 0.691 0.411 2.8 7.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.68 19.37 13557 720 94.9 0.18392 0.18147 0.1905 0.23093 0.2316 RANDOM 39.791
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 -0.06 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.356 r_dihedral_angle_4_deg 22.332 r_dihedral_angle_3_deg 14.776 r_long_range_B_refined 13.074 r_long_range_B_other 13.06 r_scangle_other 9.713 r_dihedral_angle_1_deg 6.536 r_mcangle_other 6.393 r_mcangle_it 6.39 r_scbond_it 6.198
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.356 r_dihedral_angle_4_deg 22.332 r_dihedral_angle_3_deg 14.776 r_long_range_B_refined 13.074 r_long_range_B_other 13.06 r_scangle_other 9.713 r_dihedral_angle_1_deg 6.536 r_mcangle_other 6.393 r_mcangle_it 6.39 r_scbond_it 6.198 r_scbond_other 6.155 r_mcbond_it 4.479 r_mcbond_other 4.473 r_angle_refined_deg 2.306 r_angle_other_deg 1.186 r_chiral_restr 0.141 r_bond_refined_d 0.027 r_gen_planes_refined 0.012 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 736 Nucleic Acid Atoms Solvent Atoms 45 Heterogen Atoms 19
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction XDS data reduction SHELXDE phasing