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Crystal structure of the Legionella pneumophila ChiA C-terminal domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.2 M ammonium acetate, 0.1 M Bis-Tris pH 5.5, 45% (v/v) 2-Methyl-2,4-pentanediol
Crystal Properties Matthews coefficient Solvent content 2.45 49.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.37 α = 90 b = 56.64 β = 93.79 c = 128.96 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2013-07-07 M SINGLE WAVELENGTH 2 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2013-07-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.97949 Diamond I04 2 SYNCHROTRON DIAMOND BEAMLINE I02 1.7 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.71 64.34 99.9 0.061 0.066 0.025 19.2 6.8 75905 16.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.71 1.75 99.9 0.658 0.712 0.269 2.8 6.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SIRAS FREE R-VALUE 1.71 64.339 75904 3817 99.909 0.147 0.1462 0.1489 0.168 0.1705 20.886
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.226 -0.343 0.819 -0.991
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.755 r_dihedral_angle_4_deg 11.605 r_dihedral_angle_3_deg 11.007 r_dihedral_angle_1_deg 7.1 r_lrange_it 3.458 r_lrange_other 3.296 r_scangle_it 1.687 r_scangle_other 1.687 r_angle_refined_deg 1.472 r_angle_other_deg 1.449
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.755 r_dihedral_angle_4_deg 11.605 r_dihedral_angle_3_deg 11.007 r_dihedral_angle_1_deg 7.1 r_lrange_it 3.458 r_lrange_other 3.296 r_scangle_it 1.687 r_scangle_other 1.687 r_angle_refined_deg 1.472 r_angle_other_deg 1.449 r_scbond_it 1.077 r_scbond_other 1.077 r_mcangle_it 0.893 r_mcangle_other 0.893 r_mcbond_it 0.564 r_mcbond_other 0.563 r_symmetry_nbd_refined 0.225 r_nbd_refined 0.203 r_symmetry_nbd_other 0.174 r_nbtor_refined 0.168 r_nbd_other 0.166 r_xyhbond_nbd_refined 0.156 r_symmetry_xyhbond_nbd_refined 0.153 r_symmetry_nbtor_other 0.081 r_chiral_restr 0.073 r_ncsr_local_group_1 0.055 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5108 Nucleic Acid Atoms Solvent Atoms 667 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling SHARP phasing