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Crystal structure of TetR from Acinetobacter baumannii AYE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1A6I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 8.5 291 0.1 M Tris, pH8.5, 0.2 M Magnesium chloride hexahydrate, 0.2 M Sodium sulfate, and 25% PEG2000 MME
Crystal Properties Matthews coefficient Solvent content 2.24 45.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.33 α = 90 b = 85.11 β = 109.46 c = 62.35 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2017-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 2 0.98 SOLEIL PROXIMA 2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 48.37 99.7 0.061 0.063 0.017 0.999 20.3 13.7 39419
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 99.5 0.518 0.732 13.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1A6I 1.8 48.37 37479 1939 99.72 0.2093 0.2079 0.2156 0.2369 0.2473 RANDOM 42.823
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.1 0.3 -1.36 -0.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.916 r_dihedral_angle_4_deg 14.944 r_dihedral_angle_3_deg 13.211 r_dihedral_angle_1_deg 4.537 r_angle_other_deg 1.144 r_angle_refined_deg 1.131 r_chiral_restr 0.042 r_gen_planes_refined 0.003 r_bond_refined_d 0.002 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.916 r_dihedral_angle_4_deg 14.944 r_dihedral_angle_3_deg 13.211 r_dihedral_angle_1_deg 4.537 r_angle_other_deg 1.144 r_angle_refined_deg 1.131 r_chiral_restr 0.042 r_gen_planes_refined 0.003 r_bond_refined_d 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3003 Nucleic Acid Atoms Solvent Atoms 188 Heterogen Atoms 5
Software Software Software Name Purpose XDS data reduction Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction MrBUMP phasing