☰ Navigation Tabs
Crystal Structure of the KELCH domain of human KEAP1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1U6D
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 277 4M sodium formate
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.3 α = 90 b = 76.44 β = 90 c = 213.63 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2016-02-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9282 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.16 76.3 99.9 16.5 6.7 67939
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.16 2.22
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1U6D 2.16 62.24 64510 3351 99.91 0.1776 0.1761 0.1838 0.2064 0.2097 RANDOM 42.143
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.57 -0.65 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.136 r_dihedral_angle_1_deg 21.922 r_dihedral_angle_4_deg 20.56 r_dihedral_angle_3_deg 13.985 r_long_range_B_other 7.066 r_long_range_B_refined 7.059 r_scangle_other 5.499 r_scbond_it 3.616 r_scbond_other 3.574 r_mcangle_it 3.478
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.136 r_dihedral_angle_1_deg 21.922 r_dihedral_angle_4_deg 20.56 r_dihedral_angle_3_deg 13.985 r_long_range_B_other 7.066 r_long_range_B_refined 7.059 r_scangle_other 5.499 r_scbond_it 3.616 r_scbond_other 3.574 r_mcangle_it 3.478 r_mcangle_other 3.477 r_mcbond_other 2.472 r_mcbond_it 2.471 r_angle_refined_deg 1.494 r_angle_other_deg 1.19 r_chiral_restr 0.056 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4390 Nucleic Acid Atoms Solvent Atoms 417 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing