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PptA from Streptomyces chartreusis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 295 100 mM MES/HCl pH 6.5, 1.6 M MgSO4
Crystal Properties Matthews coefficient Solvent content 2.4 48.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.303 α = 90 b = 132.233 β = 90 c = 116.398 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2014-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.905002 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.037 46.196 98.9 0.106 0.106 0.111 0.999 19.2 12.3 24547 38.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.037 2.16 94.5 0.916 0.916 0.971 0.711 2.26 8.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 2.037 46.196 24546 1228 98.944 0.193 0.193 0.191 0.2014 0.237 0.2442 Random selection 43.16
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.127 -2.613 -2.515
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.157 r_dihedral_angle_4_deg 17.948 r_dihedral_angle_3_deg 13.86 r_lrange_it 8.252 r_lrange_other 8.249 r_scangle_other 6.471 r_scangle_it 6.456 r_dihedral_angle_1_deg 5.552 r_mcangle_it 4.821 r_mcangle_other 4.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.157 r_dihedral_angle_4_deg 17.948 r_dihedral_angle_3_deg 13.86 r_lrange_it 8.252 r_lrange_other 8.249 r_scangle_other 6.471 r_scangle_it 6.456 r_dihedral_angle_1_deg 5.552 r_mcangle_it 4.821 r_mcangle_other 4.82 r_scbond_it 4.205 r_scbond_other 4.202 r_mcbond_it 3.243 r_mcbond_other 3.239 r_angle_refined_deg 1.532 r_angle_other_deg 0.816 r_nbd_refined 0.229 r_metal_ion_refined 0.184 r_nbtor_refined 0.18 r_xyhbond_nbd_refined 0.175 r_symmetry_nbd_other 0.159 r_nbd_other 0.136 r_symmetry_nbtor_other 0.083 r_chiral_restr 0.08 r_symmetry_xyhbond_nbd_refined 0.079 r_symmetry_nbd_refined 0.076 r_symmetry_xyhbond_nbd_other 0.055 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2155 Nucleic Acid Atoms Solvent Atoms 134 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing