X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3SBQ 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2930.1 M bis-tris propane buffer at pH 8.5, 0.1 M sodium formate, 0.1 M sodium chloride, and 25% (w/v) of a medium molecular weight (MMW) polyethylene glycol mixture (PEG 2K, 3350, 4K and 5K MME)
Crystal Properties
Matthews coefficientSolvent content
35.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 108.916α = 90
b = 73.372β = 95.07
c = 136.342γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 2M2016-12-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06DA1.36999SLSX06DA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7848.9110015.713205189
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.781.81

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3SBQ1.7848.911949051024399.980.158760.1570.19225RANDOM28.816
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.590.330.040.48
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.325
r_dihedral_angle_4_deg16.346
r_dihedral_angle_3_deg13.89
r_dihedral_angle_1_deg7.226
r_long_range_B_refined5.769
r_long_range_B_other5.74
r_scangle_other4.372
r_scbond_it2.849
r_scbond_other2.838
r_mcangle_other2.803
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.325
r_dihedral_angle_4_deg16.346
r_dihedral_angle_3_deg13.89
r_dihedral_angle_1_deg7.226
r_long_range_B_refined5.769
r_long_range_B_other5.74
r_scangle_other4.372
r_scbond_it2.849
r_scbond_other2.838
r_mcangle_other2.803
r_mcangle_it2.802
r_mcbond_it2.004
r_mcbond_other2.004
r_angle_refined_deg1.946
r_angle_other_deg0.95
r_chiral_restr0.145
r_bond_refined_d0.021
r_gen_planes_refined0.01
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms18329
Nucleic Acid Atoms
Solvent Atoms1455
Heterogen Atoms139

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing