X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1REQ 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.5pH 7.50
Crystal Properties
Matthews coefficientSolvent content
2.7448

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 119.95α = 90
b = 160.46β = 105.01
c = 88.48γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray95IMAGE PLATEMARRESEARCHMIRROR1996-07-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONELETTRA BEAMLINE 5.2RELETTRA5.2R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1699980.050.0515.13.3170993636
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.162.2787.20.2610.2615.13.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1REQ2.220161381741398.90.2160.2060.263SAME AS 1REQ36
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.730.82-0.41.43
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor34.8
p_staggered_tor17.1
p_scangle_it5.6
p_scbond_it4.3
p_mcangle_it3.8
p_mcbond_it2.9
p_planar_tor2.8
p_multtor_nbd0.189
p_chiral_restr0.166
p_xhyhbond_nbd0.15
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor34.8
p_staggered_tor17.1
p_scangle_it5.6
p_scbond_it4.3
p_mcangle_it3.8
p_mcbond_it2.9
p_planar_tor2.8
p_multtor_nbd0.189
p_chiral_restr0.166
p_xhyhbond_nbd0.15
p_singtor_nbd0.137
p_xyhbond_nbd0.132
p_planar_d0.055
p_angle_d0.048
p_bond_d0.016
p_plane_restr0.006
p_angle_deg
p_hb_or_metal_coord
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms20664
Nucleic Acid Atoms
Solvent Atoms1150
Heterogen Atoms302

Software

Software
Software NamePurpose
AMoREphasing
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling