☰ Navigation Tabs
Ferric murine neuroglobin Gly-loop44-47/F106A mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6H6I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 1.8 M ammonium sulfate, 0.1 M Tris pH 8.5, 1% PEG1000
Crystal Properties Matthews coefficient Solvent content 3.91 68.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.587 α = 90 b = 74.587 β = 90 c = 77.091 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2019-03-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 5.2R 1 ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 37.32 100 0.114 0.12 0.999 17.35 11.4 10869
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.49 100 0.81 2.34 11.31
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6H6I 2.3 37.32 10869 534 99.96 0.17298 0.17057 0.1832 0.21855 0.2146 RANDOM 49.83
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.18 0.09 0.18 -0.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.291 r_dihedral_angle_4_deg 25.894 r_dihedral_angle_3_deg 17.887 r_long_range_B_other 9.992 r_long_range_B_refined 9.988 r_scangle_other 7.051 r_dihedral_angle_1_deg 5.896 r_mcangle_it 5.734 r_mcangle_other 5.731 r_scbond_it 4.961
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.291 r_dihedral_angle_4_deg 25.894 r_dihedral_angle_3_deg 17.887 r_long_range_B_other 9.992 r_long_range_B_refined 9.988 r_scangle_other 7.051 r_dihedral_angle_1_deg 5.896 r_mcangle_it 5.734 r_mcangle_other 5.731 r_scbond_it 4.961 r_scbond_other 4.958 r_mcbond_it 4.164 r_mcbond_other 4.111 r_angle_refined_deg 1.629 r_angle_other_deg 1.294 r_chiral_restr 0.081 r_bond_refined_d 0.01 r_gen_planes_other 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1115 Nucleic Acid Atoms Solvent Atoms 65 Heterogen Atoms 89
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing