6R9L
A quadruplex hybrid structure with lpp loop orientation and 5 syn residues
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-1H NOESY | 0.8 mM MYC4t-5s | 90% H2O/10% D2O | 10 mM | 7 | 1 atm | 303 | Bruker AVANCE NEO 600 |
| 2 | 2D DQF-COSY | 0.8 mM MYC4t-5s | 90% H2O/10% D2O | 10 mM | 7 | 1 atm | 303 | Bruker AVANCE NEO 600 |
| 3 | 2D 1H-13C HSQC | 0.8 mM MYC4t-5s | 90% H2O/10% D2O | 10 mM | 7 | 1 atm | 303 | Bruker AVANCE NEO 600 |
| 4 | 2D 1H-1H NOESY | 0.8 mM MYC4t-5s | 100% D2O | 10 mM | 7 | 1 atm | 303 | Bruker AVANCE NEO 600 |
| 5 | 2D DQF-COSY | 0.8 mM MYC4t-5s | 100% D2O | 10 mM | 7 | 1 atm | 303 | Bruker AVANCE NEO 600 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE NEO | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | Xplor-NIH | |
| simulated annealing | Amber | |
| molecular dynamics | ||
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 20 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | processing | TopSpin | 3 | Bruker Biospin |
| 2 | chemical shift assignment | CcpNmr Analysis | CCPN | |
| 3 | structure calculation | Xplor-NIH | Schwieters, Kuszewski, Tjandra and Clore | |
| 4 | structure calculation | Amber | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman | |
