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C-SH2 domain of SHP-2 in complex with phospho-ITSM of PD-1
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 800 uM [U-13C; U-15N] C-SH2 domain of SHP-2, 1000 uM ITSM 90% H2O/10% D2O 150 mM 6.8 1 atm 298 Bruker AVANCE III HD 600 2 3D HNCO 800 uM [U-13C; U-15N] C-SH2 domain of SHP-2, 1000 uM ITSM 90% H2O/10% D2O 150 mM 6.8 1 atm 298 Bruker AVANCE III HD 600 3 3D HNCACB 800 uM [U-13C; U-15N] C-SH2 domain of SHP-2, 1000 uM ITSM 90% H2O/10% D2O 150 mM 6.8 1 atm 298 Bruker AVANCE III HD 600 4 3D HN(COCA)CB 800 uM [U-13C; U-15N] C-SH2 domain of SHP-2, 1000 uM ITSM 90% H2O/10% D2O 150 mM 6.8 1 atm 298 Bruker AVANCE III HD 600 5 3D HCCH-TOCSY 800 uM [U-13C; U-15N] C-SH2 domain of SHP-2, 1000 uM ITSM 90% H2O/10% D2O 150 mM 6.8 1 atm 298 Bruker AVANCE III HD 600 6 2D 1H-13C HSQC 800 uM [U-13C; U-15N] C-SH2 domain of SHP-2, 1000 uM ITSM 90% H2O/10% D2O 150 mM 6.8 1 atm 298 Bruker AVANCE III HD 600 7 3D NOESY-13C HSQC 800 uM [U-13C; U-15N] C-SH2 domain of SHP-2, 1000 uM ITSM 90% H2O/10% D2O 150 mM 6.8 1 atm 298 Bruker AVANCE III HD 850 8 3D 13C/15N-filtered NOESY-13C HSQC 800 uM [U-13C; U-15N] C-SH2 domain of SHP-2, 1000 uM ITSM 90% H2O/10% D2O 150 mM 6.8 1 atm 298 Bruker AVANCE III HD 600 9 2D 13C/15N-filtered 1H-1H NOESY 800 uM [U-13C; U-15N] C-SH2 domain of SHP-2, 640 uM ITSM 90% H2O/10% D2O 150 mM 6.8 1 atm 298 Bruker AVANCE III HD 600 10 2D 13C/15N-filtered 1H-1H TOCSY 800 uM [U-13C; U-15N] C-SH2 domain of SHP-2, 640 uM ITSM 90% H2O/10% D2O 150 mM 6.8 1 atm 298 Bruker AVANCE III HD 600 11 3D NOESY-15N HSQC 800 uM [U-13C; U-15N] C-SH2 domain of SHP-2, 1000 uM ITSM 90% H2O/10% D2O 150 mM 6.8 1 atm 298 Bruker AVANCE III HD 850
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III HD 850 2 Bruker AVANCE III HD 600
NMR Refinement Method Details Software simulated annealing-molecular dynamics ARIA and CNS were used in combination ARIA simulated annealing-molecular dynamics ARIA and CNS were used in combination CNS
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 150 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 2 collection TopSpin Bruker Biospin 3 peak picking CcpNmr Analysis CCPN 4 chemical shift assignment CcpNmr Analysis CCPN 5 structure calculation ARIA Linge, O'Donoghue and Nilges 6 structure calculation CNS Brunger, Adams, Clore, Gros, Nilges and Read 7 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax