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Structure of MBP-Mcl-1 in complex with compound 7a
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5LOF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 284 25% PEG3350, 0.2M MAGNESIUM FORMATE, 1MM MALTOSE
Crystal Properties Matthews coefficient Solvent content 2.13 42.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.545 α = 90 b = 133.748 β = 90 c = 37.338 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2017-04-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9762 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 28.9 98.7 0.098 7.9 3.9 23650
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.31 95.6 0.275 2.9 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5lof 2.3 15 21048 1149 98.36 0.2213 0.2188 0.2663 0.28 RANDOM 41.087
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.16 -5.63 3.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.811 r_dihedral_angle_4_deg 21.26 r_dihedral_angle_3_deg 18.147 r_dihedral_angle_1_deg 5.328 r_angle_refined_deg 1.751 r_angle_other_deg 1.064 r_chiral_restr 0.103 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.811 r_dihedral_angle_4_deg 21.26 r_dihedral_angle_3_deg 18.147 r_dihedral_angle_1_deg 5.328 r_angle_refined_deg 1.751 r_angle_other_deg 1.064 r_chiral_restr 0.103 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3965 Nucleic Acid Atoms Solvent Atoms 142 Heterogen Atoms 49
Software Software Software Name Purpose REFMAC refinement XDS data reduction PDB_EXTRACT data extraction XSCALE data scaling MOLREP phasing