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Room temperature structure of the ground state of AtPhot2LOV2 recorded after an accumulated dose of 354 kGy
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4EEP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 12-17% PEG8000
0.2 M Calcium acetate
0.1 M MES
Crystal Properties Matthews coefficient Solvent content 1.85 33.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.886 α = 90 b = 40.886 β = 90 c = 132.691 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 PIXEL DECTRIS EIGER R 4M 2016-05-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-3 0.968 ESRF MASSIF-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.08 39.07 93.6 0.999 10.72 8.57 7399
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.08 2.15 87.4 0.501 1.73
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4EEP 2.08 24.21 6554 322 94.14 0.24925 0.24731 0.2489 0.29153 0.315 RANDOM 38.703
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.201 r_dihedral_angle_4_deg 16.807 r_dihedral_angle_3_deg 12.216 r_dihedral_angle_1_deg 6.448 r_long_range_B_refined 3.496 r_long_range_B_other 3.494 r_mcangle_it 2.075 r_mcangle_other 2.074 r_scangle_other 2.067 r_angle_refined_deg 1.239
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.201 r_dihedral_angle_4_deg 16.807 r_dihedral_angle_3_deg 12.216 r_dihedral_angle_1_deg 6.448 r_long_range_B_refined 3.496 r_long_range_B_other 3.494 r_mcangle_it 2.075 r_mcangle_other 2.074 r_scangle_other 2.067 r_angle_refined_deg 1.239 r_mcbond_it 1.235 r_mcbond_other 1.233 r_scbond_other 1.227 r_scbond_it 1.226 r_angle_other_deg 1.029 r_chiral_restr 0.036 r_gen_planes_refined 0.003 r_bond_refined_d 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 895 Nucleic Acid Atoms Solvent Atoms 8 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing