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Cryogenic temperature structure of Hen Egg White Lysozyme recorded after an accumulated dose of 110 kGy
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.8 293 6-9% NaCl et 0.1M Na Acetate pH 4.8.
Crystal Properties Matthews coefficient Solvent content 1.95 36.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.56 α = 90 b = 77.56 β = 90 c = 37.13 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2018-08-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.9763 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.42 33.49 93.1 1 17.49 6.5 20446 23.149
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.42 1.46 92.5 0.703 1.99 6.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.42 33.49 19400 1046 93.08 0.16924 0.16732 0.1763 0.20351 0.2082 RANDOM 22.289
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.45 0.45 -0.9
RMS Deviations Key Refinement Restraint Deviation r_scbond_it 54.547 r_scbond_other 54.546 r_long_range_B_other 49.018 r_long_range_B_refined 48.6 r_scangle_other 47.247 r_mcangle_it 44.997 r_mcangle_other 44.965 r_mcbond_it 43.089 r_mcbond_other 43.089 r_dihedral_angle_2_deg 30.741
RMS Deviations Key Refinement Restraint Deviation r_scbond_it 54.547 r_scbond_other 54.546 r_long_range_B_other 49.018 r_long_range_B_refined 48.6 r_scangle_other 47.247 r_mcangle_it 44.997 r_mcangle_other 44.965 r_mcbond_it 43.089 r_mcbond_other 43.089 r_dihedral_angle_2_deg 30.741 r_dihedral_angle_4_deg 15.675 r_dihedral_angle_3_deg 13.399 r_dihedral_angle_1_deg 6.816 r_angle_refined_deg 1.78 r_angle_other_deg 1.538 r_chiral_restr 0.094 r_bond_refined_d 0.011 r_gen_planes_refined 0.01 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 998 Nucleic Acid Atoms Solvent Atoms 118 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing