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Cryogenic temperature structure of the fluorescent protein Cerulean recorded after an accumulated dose of 290 kGy
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WSO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 100mM HEPES pH 7.0, 12% PEG8000, 100mM MgCl2
Crystal Properties Matthews coefficient Solvent content 2.1 41.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.11 α = 90 b = 62.72 β = 90 c = 70.34 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2014-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.976 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.46 46.82 99.9 0.999 24.07 7.1 39910 28.345
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.46 1.5 99.9 0.724 1.56 7.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2WSO 1.46 46.81 37919 1991 99.82 0.16505 0.16335 0.1637 0.19689 0.1965 RANDOM 27.035
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.9 -1.21 2.11
RMS Deviations Key Refinement Restraint Deviation r_scbond_it 57.676 r_scbond_other 57.649 r_dihedral_angle_2_deg 35.991 r_long_range_B_other 35.814 r_long_range_B_refined 35.185 r_scangle_other 31.072 r_dihedral_angle_4_deg 17.464 r_dihedral_angle_3_deg 12.189 r_mcbond_it 9.11 r_mcbond_other 9.071
RMS Deviations Key Refinement Restraint Deviation r_scbond_it 57.676 r_scbond_other 57.649 r_dihedral_angle_2_deg 35.991 r_long_range_B_other 35.814 r_long_range_B_refined 35.185 r_scangle_other 31.072 r_dihedral_angle_4_deg 17.464 r_dihedral_angle_3_deg 12.189 r_mcbond_it 9.11 r_mcbond_other 9.071 r_mcangle_other 7.763 r_mcangle_it 7.754 r_dihedral_angle_1_deg 6.336 r_angle_refined_deg 1.546 r_angle_other_deg 0.743 r_chiral_restr 0.088 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1761 Nucleic Acid Atoms Solvent Atoms 276 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing