☰ Navigation Tabs
Tryptophan synthase subunit alpha from Streptococcus pneumoniae with 3D domain swap in the core of TIM barrel
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 277.15 0.17 M Na acetate, 0.085 M Tris/HCl, pH 8.5, 25% PEG 4K, 15% glycerol
Crystal Properties Matthews coefficient Solvent content 2.46 49.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.81 α = 90 b = 138.62 β = 117.21 c = 107.25 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r mirrors 2014-11-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9793 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.54 48.99 97.1 0.056 9.53 1.93 171460 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.54 2.68 98.4 0.968 1.26 1.95
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 2.54 48.99 171460 2091 99.44 0.19353 0.19304 0.1972 0.23435 0.2383 RANDOM 79.575
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.52 -1.1 1.13 -0.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.084 r_dihedral_angle_3_deg 14.91 r_dihedral_angle_4_deg 14.257 r_dihedral_angle_1_deg 5.504 r_long_range_B_other 4.495 r_long_range_B_refined 4.494 r_scangle_other 2.772 r_mcangle_it 2.519 r_mcangle_other 2.519 r_scbond_it 1.688
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.084 r_dihedral_angle_3_deg 14.91 r_dihedral_angle_4_deg 14.257 r_dihedral_angle_1_deg 5.504 r_long_range_B_other 4.495 r_long_range_B_refined 4.494 r_scangle_other 2.772 r_mcangle_it 2.519 r_mcangle_other 2.519 r_scbond_it 1.688 r_scbond_other 1.687 r_mcbond_it 1.543 r_mcbond_other 1.524 r_angle_refined_deg 1.194 r_angle_other_deg 0.406 r_chiral_restr 0.054 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 18886 Nucleic Acid Atoms Solvent Atoms 339 Heterogen Atoms 72
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling CRANK2 phasing SBC-Collect data collection