6QJB
Truncated Evasin-3 (tEv3 17-56)
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 100 mM EDTA, 200 mM sodium azide, 25 mM [U-2H] sodium acetate | 95% H2O/5% D2O | 325 mM | 4.5 | 1 atm | 37 | Bruker AVANCE III 700 |
2 | 3D HNCO | 100 mM EDTA, 200 mM sodium azide, 25 mM [U-2H] sodium acetate | 95% H2O/5% D2O | 325 mM | 4.5 | 1 atm | 37 | Bruker AVANCE III 700 |
3 | 3D HNCACB | 100 mM EDTA, 200 mM sodium azide, 25 mM [U-2H] sodium acetate | 95% H2O/5% D2O | 325 mM | 4.5 | 1 atm | 37 | Bruker AVANCE III 700 |
4 | 3D CBCA(CO)NH | 100 mM EDTA, 200 mM sodium azide, 25 mM [U-2H] sodium acetate | 95% H2O/5% D2O | 325 mM | 4.5 | 1 atm | 37 | Bruker AVANCE III 700 |
5 | 2D 1H-13C HSQC | 100 mM EDTA, 200 mM sodium azide, 25 mM [U-2H] sodium acetate | 95% H2O/5% D2O | 325 mM | 4.5 | 1 atm | 37 | Bruker AVANCE III 700 |
6 | 2D 1H-1H NOESY | 100 mM EDTA, 200 mM sodium azide, 25 mM [U-2H] sodium acetate | 95% H2O/5% D2O | 325 mM | 4.5 | 1 atm | 37 | Bruker AVANCE III 700 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 700 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | NMRe |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | NMRFAM-SPARKY | Bioinformatics. 2015 Apr 15; 31(8):1325-7. Epub 2014 Dec 12 NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy. Lee W, Tonelli M, Markley JL | |
2 | structure calculation | Xplor-NIH | Schwieters, Kuszewski, Tjandra and Clore | |
3 | refinement | NMRe | Hyojung Ryu, GyuTae Lim, Bong Hyun Sung, Jinhyuk Lee |