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Structure of human Bcl-2 in complex with THIQ-phenyl pyrazole compound
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 284 0.2M Ca Acetate, 15% PEG4k, 0.1M Tris buffer pH 7.5
Crystal Properties Matthews coefficient Solvent content 1.93 36.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.57 α = 90 b = 50.104 β = 90 c = 65.371 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-12-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9728 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 25 82.8 0.071 10.7 4.4 14748
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 45.2 0.36 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 15 12725 613 88.74 0.1673 0.1655 0.18 0.2021 0.2169 RANDOM 29.485
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.74 -2.4 -0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.631 r_dihedral_angle_4_deg 14.415 r_dihedral_angle_3_deg 14.231 r_dihedral_angle_1_deg 4.869 r_angle_refined_deg 1.45 r_angle_other_deg 1.063 r_chiral_restr 0.075 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.631 r_dihedral_angle_4_deg 14.415 r_dihedral_angle_3_deg 14.231 r_dihedral_angle_1_deg 4.869 r_angle_refined_deg 1.45 r_angle_other_deg 1.063 r_chiral_restr 0.075 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1157 Nucleic Acid Atoms Solvent Atoms 156 Heterogen Atoms 41
Software Software Software Name Purpose SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction DENZO data reduction MOLREP phasing