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Human carbonic anhydrase II with bound IrCp* complex (cofactor 8) to generate an artificial transfer hydrogenase (ATHase)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3ZP9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.9 293 2.6 M ammonium sulfate, 50 mM Tris-H2SO4
Crystal Properties Matthews coefficient Solvent content 2.16 43.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.396 α = 90 b = 41.68 β = 104.4 c = 72.353 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2018-09-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.000 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 41.68 96.7 0.063 0.998 14.8 6 43249
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.47 71.1 0.473 0.488 2.8 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3ZP9 1.45 41.1 40088 2017 96.48 0.1569 0.1563 0.156 0.1674 0.1664 RANDOM 17.442
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 0.1 -0.15 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.301 r_dihedral_angle_4_deg 23.633 r_dihedral_angle_3_deg 12.887 r_dihedral_angle_1_deg 6.934 r_mcangle_it 2.431 r_angle_refined_deg 2.386 r_angle_other_deg 2.348 r_mcbond_it 1.668 r_mcbond_other 1.664 r_chiral_restr 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.301 r_dihedral_angle_4_deg 23.633 r_dihedral_angle_3_deg 12.887 r_dihedral_angle_1_deg 6.934 r_mcangle_it 2.431 r_angle_refined_deg 2.386 r_angle_other_deg 2.348 r_mcbond_it 1.668 r_mcbond_other 1.664 r_chiral_restr 0.1 r_bond_other_d 0.035 r_gen_planes_other 0.021 r_bond_refined_d 0.015 r_gen_planes_refined 0.013
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2029 Nucleic Acid Atoms Solvent Atoms 196 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction Aimless data scaling PHASER phasing