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Solution NMR ensemble for human ubiquitin at 298K compiled using the CoMAND method
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D CNH-NOESY 1.0 mM [U-99% 13C; U-99% 15N] human ubiquitin, 40 mM sodium phosphate 95% H2O/5% D2O 100 mM 5.8 1 atm 298 Bruker AVANCE III 800 2 3D C(CO)NH 1.0 mM [U-99% 13C; U-99% 15N] human ubiquitin, 40 mM sodium phosphate 95% H2O/5% D2O 100 mM 5.8 1 atm 298 Bruker AVANCE III 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 2 Bruker AVANCE III 800 3 Bruker AVANCE III 600
NMR Refinement Method Details Software R-factor based frame picking frames selected from unrestrained MD simulations to minimise the overall NOESY-based R-factor CoMAND
NMR Ensemble Information Conformer Selection Criteria NOESY-based R-factor selection Conformers Calculated Total Number 10000 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 6 collection TopSpin Bruker Biospin 1 chemical shift assignment Sparky Goddard 3 structure calculation Rosetta 3.6 Das & Baker 4 refinement NAMD 2.12 University of Illinois 2 refinement Shine Riss & Coles 5 refinement CoMAND in house