☰ Navigation Tabs
EM structure of a EBOV-GP bound to 4M0368 neutralizing antibody
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5JQ3
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 14.785 f_angle_d 1.666 f_chiral_restr 0.084 f_bond_d 0.015 f_plane_restr 0.011
Sample EBOV-GP in complex with neutralizing 3T0331 antibody Sample Components EBOV-GP neutralizing 3T0331 antibody
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 123880 Reported Resolution (Å) 3.3 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C3
Map-Model Fitting and Refinement Id 1 (5JQ3) Refinement Space Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON III (4k x 4k) Electron Dose (electrons/Å**2) 40
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 96000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC V2 IMAGE ACQUISITION EPU CTF CORRECTION CTFFIND 4 MODEL FITTING UCSF Chimera 1.13.1 INITIAL EULER ASSIGNMENT cryoSPARC 2 FINAL EULER ASSIGNMENT cryoSPARC V2 RECONSTRUCTION cryoSPARC V2 MODEL REFINEMENT PHENIX 3297
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 123880