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Structure of XIAP-BIR1 V86E mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4OXC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1 M Tris, pH 8.0, 0.2 M lithium sulphate, PEG 4000
Crystal Properties Matthews coefficient Solvent content 1.87 34.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.53 α = 90 b = 72.7 β = 96.16 c = 70.18 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL DECTRIS PILATUS 2M 2017-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.8731 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 36.35 99.6 4.4 3.7 16267
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.36
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4OXC 2.3 36.35 15411 840 72.83 0.2656 0.26357 0.2661 0.3032 0.3014 RANDOM 43.301
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -10.67 -8.38 -28.7 39.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.764 r_dihedral_angle_3_deg 22.592 r_dihedral_angle_4_deg 16.939 r_long_range_B_refined 8.76 r_long_range_B_other 8.755 r_mcangle_it 6.498 r_mcangle_other 6.497 r_dihedral_angle_1_deg 6.381 r_scangle_other 5.825 r_mcbond_it 4.487
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.764 r_dihedral_angle_3_deg 22.592 r_dihedral_angle_4_deg 16.939 r_long_range_B_refined 8.76 r_long_range_B_other 8.755 r_mcangle_it 6.498 r_mcangle_other 6.497 r_dihedral_angle_1_deg 6.381 r_scangle_other 5.825 r_mcbond_it 4.487 r_mcbond_other 4.479 r_scbond_it 4.21 r_scbond_other 4.208 r_angle_other_deg 2.442 r_angle_refined_deg 1.637 r_chiral_restr 0.076 r_bond_other_d 0.036 r_gen_planes_other 0.011 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2366 Nucleic Acid Atoms Solvent Atoms 61 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing