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Crystal structure of reduced Aquifex aeolicus NADH-quinone oxidoreductase subunits NuoE G129S and NuoF bound to NADH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 6.75 281 (NH4)2SO4, BisTris, NaCl, cryo-protection with glycerol
Crystal Properties Matthews coefficient Solvent content 2.72 54.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.637 α = 90 b = 116.339 β = 90 c = 190.286 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M Rh coated meridionally focussing mirror 2018-11-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.000 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.83 48.15 99.6 0.153 0.159 0.043 0.999 11.8 13.7 124614
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.83 1.86 99.5 1.771 1.837 0.486 0.761 14.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.83 48.15 118114 6409 99.46 0.1731 0.1719 0.1801 0.1967 0.2042 RANDOM 28.416
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.13 1.88 -2.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.711 r_dihedral_angle_4_deg 13.124 r_dihedral_angle_3_deg 12.412 r_dihedral_angle_1_deg 6.306 r_angle_refined_deg 1.219 r_angle_other_deg 1.19 r_chiral_restr 0.06 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.711 r_dihedral_angle_4_deg 13.124 r_dihedral_angle_3_deg 12.412 r_dihedral_angle_1_deg 6.306 r_angle_refined_deg 1.219 r_angle_other_deg 1.19 r_chiral_restr 0.06 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9117 Nucleic Acid Atoms Solvent Atoms 977 Heterogen Atoms 239
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction