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Crystal structure of Cryptosporidium hominis CPSF3 in the apo form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6Q55
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 273 17% (v/v) Poly Ethylene Glycol 4000, 10% (v/v) Isopropanol, 100 mM HEPES pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.6 52.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.36 α = 90 b = 90.36 β = 90 c = 238.66 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2017-04-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.97625 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 48 98 0.07 0.07 0.99 15.7 10.1 82588
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.66 96.8 0.8 0.9 0.84 2.6 9.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6Q55 1.55 47.49 78391 4197 98.03 0.13969 0.1376 0.1522 0.17931 0.1878 RANDOM 26.46
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.95 -0.47 -0.95 3.08
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 65.533 r_dihedral_angle_2_deg 31.48 r_sphericity_bonded 27.6 r_dihedral_angle_4_deg 19.159 r_dihedral_angle_3_deg 13.806 r_long_range_B_refined 8.94 r_rigid_bond_restr 7.283 r_long_range_B_other 6.728 r_dihedral_angle_1_deg 6.558 r_scangle_other 4.133
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 65.533 r_dihedral_angle_2_deg 31.48 r_sphericity_bonded 27.6 r_dihedral_angle_4_deg 19.159 r_dihedral_angle_3_deg 13.806 r_long_range_B_refined 8.94 r_rigid_bond_restr 7.283 r_long_range_B_other 6.728 r_dihedral_angle_1_deg 6.558 r_scangle_other 4.133 r_scbond_other 3.295 r_scbond_it 3.294 r_mcangle_it 3.24 r_mcangle_other 3.239 r_mcbond_it 2.622 r_mcbond_other 2.619 r_angle_refined_deg 1.293 r_angle_other_deg 0.919 r_chiral_restr 0.068 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3613 Nucleic Acid Atoms Solvent Atoms 471 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing