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Crystal structure of Cryptosporidium hominis CPSF3 in complex with Compound 61
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2I7V homology model based on 2I7V
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 17% (v/v) Poly Ethylene Glycol 4000, 10% (v/v) Isopropanol, 100 mM HEPES pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.6 52.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.67 α = 90 b = 90.67 β = 90 c = 237.59 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2018-02-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.97941 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 60 99.6 0.12 0.13 0.99 10.3 7.8 39853
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 99.6 0.24 0.25 0.26 1 7.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT homology model based on 2I7V 2 47.42 37874 1979 99.63 0.18335 0.18131 0.1931 0.22244 0.2315 RANDOM 49.384
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.44 0.22 0.44 -1.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.763 r_dihedral_angle_4_deg 22.989 r_dihedral_angle_3_deg 16.2 r_long_range_B_refined 10.826 r_long_range_B_other 10.826 r_scangle_other 7.692 r_dihedral_angle_1_deg 6.992 r_mcangle_other 5.976 r_mcangle_it 5.967 r_scbond_it 5.125
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.763 r_dihedral_angle_4_deg 22.989 r_dihedral_angle_3_deg 16.2 r_long_range_B_refined 10.826 r_long_range_B_other 10.826 r_scangle_other 7.692 r_dihedral_angle_1_deg 6.992 r_mcangle_other 5.976 r_mcangle_it 5.967 r_scbond_it 5.125 r_scbond_other 5.106 r_mcbond_it 3.999 r_mcbond_other 3.981 r_angle_refined_deg 1.504 r_angle_other_deg 0.883 r_chiral_restr 0.125 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3613 Nucleic Acid Atoms Solvent Atoms 214 Heterogen Atoms 66
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing