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Domain-swapped dimer of Acanthamoeba castellanii CYP51
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4C27
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 296 15% PEG 3350; 0.2 M di-sodium DL-malate, pH 6.8-7.2
Crystal Properties Matthews coefficient Solvent content 3.08 60.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.35 α = 90 b = 101.57 β = 90 c = 123.74 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 PIXEL DECTRIS PILATUS3 S 6M mirrors 2019-05-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.1159 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 80 98.2 0.059 17.68 11.4 115283 0.3 44.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 83.9 2.86 0.45 5.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 4C27 1.8 78.51 109450 5783 98.12 0.1874 0.1853 0.193 0.2267 0.2308 RANDOM 49.704
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.81 2.42 -1.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.937 r_dihedral_angle_4_deg 16.015 r_dihedral_angle_3_deg 14.948 r_long_range_B_refined 8.707 r_long_range_B_other 8.707 r_scangle_other 7.178 r_dihedral_angle_1_deg 6.276 r_mcangle_it 5.348 r_mcangle_other 5.347 r_scbond_it 5.095
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.937 r_dihedral_angle_4_deg 16.015 r_dihedral_angle_3_deg 14.948 r_long_range_B_refined 8.707 r_long_range_B_other 8.707 r_scangle_other 7.178 r_dihedral_angle_1_deg 6.276 r_mcangle_it 5.348 r_mcangle_other 5.347 r_scbond_it 5.095 r_scbond_other 5.094 r_mcbond_it 4.32 r_mcbond_other 4.318 r_angle_refined_deg 1.974 r_angle_other_deg 1.086 r_chiral_restr 0.137 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7133 Nucleic Acid Atoms Solvent Atoms 510 Heterogen Atoms 110
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing