6PV2
Backbone-modified variant of zinc finger 2 from the transcription factor Sp1 DNA binding domain: Orn in the metal-binding turn
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 1.2 mM zinc finger 2 from transcription factor Sp1 DNA-binding domain, Orn turn variant, 10 mM [U-2H] TRIS, 0.05 mM DSS, 1.8 mM zinc chloride | 90% H2O/10% D2O | 10 mM | 6 | 1 atm | 298 | Bruker AVANCE 700 |
2 | 2D 1H-1H COSY | 1.2 mM zinc finger 2 from transcription factor Sp1 DNA-binding domain, Orn turn variant, 10 mM [U-2H] TRIS, 0.05 mM DSS, 1.8 mM zinc chloride | 90% H2O/10% D2O | 10 mM | 6 | 1 atm | 298 | Bruker AVANCE 700 |
3 | 2D 1H-1H NOESY | 1.2 mM zinc finger 2 from transcription factor Sp1 DNA-binding domain, Orn turn variant, 10 mM [U-2H] TRIS, 0.05 mM DSS, 1.8 mM zinc chloride | 90% H2O/10% D2O | 10 mM | 6 | 1 atm | 298 | Bruker AVANCE 700 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 700 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | ARIA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | TopSpin | Bruker Biospin | |
2 | data analysis | Sparky | Goddard | |
3 | refinement | ARIA | Linge, O'Donoghue and Nilges | |
4 | structure calculation | ARIA | Linge, O'Donoghue and Nilges |