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Complex of CRACR2a with a Dynein Light Intermediate Chain Peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 16% w/v polyethylene glycol 10,000, 0.5 M Bis-Tris, pH 6.5, and 10 mM CoCl2
Crystal Properties Matthews coefficient Solvent content 2.84 62.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.29 α = 90 b = 161.99 β = 104.01 c = 56.9 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2018-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL14-1 0.9793 SSRL BL14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.66 43.352 99.9 0.359 0.114 0.96 7.2 10.8 28181
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.66 2.78 0.953 0.33 0.44
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.66 43.35 23908 2742 92.56 0.2008 0.1971 0.2324 0.2551 RANDOM 63.405
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.86 6.42 8.96 -6.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.77 r_dihedral_angle_4_deg 22.627 r_dihedral_angle_3_deg 18.927 r_dihedral_angle_1_deg 5.791 r_angle_other_deg 2.794 r_angle_refined_deg 1.505 r_chiral_restr 0.094 r_bond_refined_d 0.017 r_gen_planes_other 0.011 r_bond_other_d 0.009
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.77 r_dihedral_angle_4_deg 22.627 r_dihedral_angle_3_deg 18.927 r_dihedral_angle_1_deg 5.791 r_angle_other_deg 2.794 r_angle_refined_deg 1.505 r_chiral_restr 0.094 r_bond_refined_d 0.017 r_gen_planes_other 0.011 r_bond_other_d 0.009 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5543 Nucleic Acid Atoms Solvent Atoms 49 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing