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Crystal structure of HzTransib transposase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 100 mM HEPES, pH 7.0, 0.7-0.8 M NaH2PO4, 0.75 M KH2PO4
Crystal Properties Matthews coefficient Solvent content 3.86 68.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 160.292 α = 90 b = 160.292 β = 90 c = 235.858 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2018-03-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.9792, 0.9197, 1.4586, 1.1398, 1.0718, 1.0087 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.01 200 99.19 0.08633 0.09273 0.03321 0.999 14.47 7.7 35894 120.04
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.01 3.1173 98.2 2.012 2.16 0.7716 0.51 0.66 7.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS FREE R-VALUE 3.01 80.15 1.34 35840 1792 99.18 0.2222 0.2193 0.2339 0.277 0.2855 Random selection 148.17
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 4.4174 f_angle_d 0.7501 f_chiral_restr 0.0459 f_plane_restr 0.0047 f_bond_d 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7247 Nucleic Acid Atoms Solvent Atoms 28 Heterogen Atoms 83
Software Software Software Name Purpose PHENIX refinement PHENIX refinement Coot model building XDS data reduction XDS data scaling AutoSol phasing