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Structural Basis for Client Recognition and Activity of Hsp40 Chaperones
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-13C HSQC 1 mM [U-13C; U-15N] PhoA-CBD1, 20 mM potassium phosphate, 75 mM potassium chloride, 0.04 % sodium azide 90% H2O/10% D2O 120 mM 7.0 1 atm 298 Bruker AVANCE NEO 700 2 2D 1H-15N HSQC 1 mM [U-13C; U-15N] PhoA-CBD1, 20 mM potassium phosphate, 75 mM potassium chloride, 0.04 % sodium azide 90% H2O/10% D2O 120 mM 7.0 1 atm 298 Bruker AVANCE NEO 700 3 3D HNCACB 1 mM [U-13C; U-15N] PhoA-CBD1, 20 mM potassium phosphate, 75 mM potassium chloride, 0.04 % sodium azide 90% H2O/10% D2O 120 mM 7.0 1 atm 298 Bruker AVANCE NEO 700 4 3D 1H-15N NOESY 1 mM [U-13C; U-15N] PhoA-CBD1, 20 mM potassium phosphate, 75 mM potassium chloride, 0.04 % sodium azide 90% H2O/10% D2O 120 mM 7.0 1 atm 298 Bruker AVANCE NEO 700 5 3D 1H-13C NOESY 1 mM [U-13C; U-15N] PhoA-CBD1, 20 mM potassium phosphate, 75 mM potassium chloride, 0.04 % sodium azide 90% H2O/10% D2O 120 mM 7.0 1 atm 298 Bruker AVANCE NEO 700 12 3D HBHA(CO)NH 1 mM [U-13C; U-15N] PhoA-CBD1, 20 mM potassium phosphate, 75 mM potassium chloride, 0.04 % sodium azide 90% H2O/10% D2O 120 mM 7.0 1 atm 298 Bruker AVANCE NEO 700 11 3D CCH-TOCSY 1 mM [U-13C; U-15N] PhoA-CBD1, 20 mM potassium phosphate, 75 mM potassium chloride, 0.04 % sodium azide 90% H2O/10% D2O 120 mM 7.0 1 atm 298 Bruker AVANCE NEO 700 10 3D HNCO 1 mM [U-13C; U-15N] PhoA-CBD1, 20 mM potassium phosphate, 75 mM potassium chloride, 0.04 % sodium azide 90% H2O/10% D2O 120 mM 7.0 1 atm 298 Bruker AVANCE NEO 700 9 3D CCH-NOESY 1 mM [U-13C; U-15N] PhoA-CBD1, 20 mM potassium phosphate, 75 mM potassium chloride, 0.04 % sodium azide 90% H2O/10% D2O 120 mM 7.0 1 atm 298 Bruker AVANCE NEO 700
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE NEO 700
NMR Refinement Method Details Software molecular dynamics restrained MD CNS
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read 2 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 3 chemical shift assignment PINE Bahrami, Markley, Assadi, and Eghbalnia 4 peak picking Sparky Goddard & Kneller 5 geometry optimization TALOS Cornilescu, Delaglio and Bax 6 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 7 collection TopSpin 4.0 Bruker Biospin