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Structure of S. pombe Lsm2-8 with processed U6 snRNA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4EMG 4EMG, 4EMH, 4EMK, 4C92, 4M7D experimental model PDB 4EMH 4EMG, 4EMH, 4EMK, 4C92, 4M7D experimental model PDB 4EMK 4EMG, 4EMH, 4EMK, 4C92, 4M7D experimental model PDB 4C92 4EMG, 4EMH, 4EMK, 4C92, 4M7D experimental model PDB 4M7D 4EMG, 4EMH, 4EMK, 4C92, 4M7D
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 289 50 mM KCl
50 mM HEPES pH 7
Pentaerythritol propoxylate (5/4 PO/OH)
Crystal Properties Matthews coefficient Solvent content 2.36 47.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.26 α = 90 b = 139.69 β = 90 c = 153.92 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2018-07-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 1.078123 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.33 78 43.7 16 86.9 28712
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.33 2.73
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 4EMG, 4EMH, 4EMK, 4C92, 4M7D 2.33 51.7 28712 43.7 0.241 0.2971
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8615 Nucleic Acid Atoms 200 Solvent Atoms 26 Heterogen Atoms
Software Software Software Name Purpose PHENIX refinement XDS data reduction STARANISO data scaling PHASER phasing