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Kaposi's sarcoma-associated herpesvirus (KSHV), C5 portal vertex structure
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 7.0951 f_angle_d 0.9231 f_chiral_restr 0.0546 f_plane_restr 0.0068 f_bond_d 0.0055
Sample Human gammaherpesvirus 8
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument HOMEMADE PLUNGER Cryogen Name ETHANE Sample Vitrification Details The sample was manually blotted and frozen with a homemade plunger.
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 39773 Reported Resolution (Å) 4.3 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C5
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol AB INITIO MODEL Refinement Target Correlation coefficient Overall B Value 177.4 Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 25
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 14000 Calibrated Magnification 24271 Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION EMAN PARTICLE SELECTION RELION 2.1 IMAGE ACQUISITION Leginon CTF CORRECTION CTFFIND 3.0 CTF CORRECTION RELION 2.1 MODEL FITTING Coot 0.8.6.1 INITIAL EULER ASSIGNMENT RELION 2.1 FINAL EULER ASSIGNMENT RELION 2.1 RECONSTRUCTION RELION 2.1 MODEL REFINEMENT PHENIX 1.13
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 44328