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TRK-A IN COMPLEX WITH LIGAND 1B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277.15 20mM Tris/HCl, pH=8.5, 50mM NaCl, 2mM DTT, 0.5mM PMSF
Crystal Properties Matthews coefficient Solvent content 2.68 54.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.915 α = 90 b = 51.915 β = 90 c = 229.322 γ = 120
Symmetry Space Group P 31 1 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2015-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.03 76.44 97.4 0.032 22.51 3.6 23189
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.03 2.27 95.1 0.441 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.03 45 21335 1815 98.69 0.22008 0.21688 0.2237 0.26029 0.2678 RANDOM 44.938
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.31 0.15 0.31 -0.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.207 r_dihedral_angle_4_deg 16.173 r_dihedral_angle_3_deg 12.265 r_long_range_B_refined 8.244 r_long_range_B_other 8.241 r_scangle_other 7.297 r_scbond_it 5.814 r_scbond_other 5.811 r_mcangle_it 5.716 r_mcangle_other 5.715
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.207 r_dihedral_angle_4_deg 16.173 r_dihedral_angle_3_deg 12.265 r_long_range_B_refined 8.244 r_long_range_B_other 8.241 r_scangle_other 7.297 r_scbond_it 5.814 r_scbond_other 5.811 r_mcangle_it 5.716 r_mcangle_other 5.715 r_dihedral_angle_1_deg 5.226 r_mcbond_it 4.738 r_mcbond_other 4.737 r_angle_other_deg 2.578 r_angle_refined_deg 1.293 r_chiral_restr 0.072 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_gen_planes_other 0.004 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2329 Nucleic Acid Atoms Solvent Atoms 57 Heterogen Atoms 33
Software Software Software Name Purpose XDS data reduction XSCALE data scaling REFMAC refinement