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Human Coa6: W59C mutant protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6PCE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.1 M Bis-Tris, pH 5.7, 0.23 M MgCl2.6H2O, 29% (w/v) PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.64 53.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.386 α = 116.86 b = 47.823 β = 98.68 c = 48.114 γ = 104.26
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2016-06-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.954 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 98.4 14.4 3.2 15400
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.28
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6PCE 2.2 38.25 14685 713 96.95 0.20273 0.20073 0.244 0.2847 RANDOM 67.389
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 -1.39 -0.6 0.25 0.13 0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.224 r_dihedral_angle_3_deg 15.652 r_long_range_B_refined 14.252 r_long_range_B_other 14.25 r_scangle_other 13.388 r_dihedral_angle_4_deg 11.154 r_scbond_it 11.124 r_scbond_other 11.119 r_mcangle_it 10.035 r_mcangle_other 10.035
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.224 r_dihedral_angle_3_deg 15.652 r_long_range_B_refined 14.252 r_long_range_B_other 14.25 r_scangle_other 13.388 r_dihedral_angle_4_deg 11.154 r_scbond_it 11.124 r_scbond_other 11.119 r_mcangle_it 10.035 r_mcangle_other 10.035 r_mcbond_it 8.634 r_mcbond_other 8.627 r_dihedral_angle_1_deg 5.325 r_angle_refined_deg 1.211 r_angle_other_deg 1.17 r_chiral_restr 0.053 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2039 Nucleic Acid Atoms Solvent Atoms 25 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement