☰ Navigation Tabs
Dickeya chrysanthemi complex with L-Asp at pH 5.6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 298 see Miller et al., FEBS Letters, 1993, 328, 275-279
Crystal Properties Matthews coefficient Solvent content 2.17 43.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.159 α = 90 b = 90.4 β = 91.88 c = 127.359 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER R 4M Multilayer X-ray mirrors VariMax HF 2017-09-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.599 30 85.8 0.055 15.1 2.92 136750
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.599 1.66 81.6 0.335
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 30 133097 3368 85.41 0.1384 0.1374 0.1523 0.1757 0.186 RANDOM 19.269
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.15 0.05 -0.48 -0.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.72 r_sphericity_free 26.841 r_dihedral_angle_4_deg 16.06 r_dihedral_angle_3_deg 13.65 r_sphericity_bonded 11.639 r_dihedral_angle_1_deg 6.257 r_rigid_bond_restr 5.646 r_angle_refined_deg 1.981 r_angle_other_deg 1.064 r_chiral_restr 0.123
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.72 r_sphericity_free 26.841 r_dihedral_angle_4_deg 16.06 r_dihedral_angle_3_deg 13.65 r_sphericity_bonded 11.639 r_dihedral_angle_1_deg 6.257 r_rigid_bond_restr 5.646 r_angle_refined_deg 1.981 r_angle_other_deg 1.064 r_chiral_restr 0.123 r_bond_refined_d 0.02 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9465 Nucleic Acid Atoms Solvent Atoms 1405 Heterogen Atoms 58
Software Software Software Name Purpose HKL-2000 data reduction HKL-2000 data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction