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Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.686 r_dihedral_angle_3_deg 13.868 r_dihedral_angle_4_deg 13.629 r_long_range_B_refined 10.709 r_long_range_B_other 10.709 r_dihedral_angle_1_deg 8.41 r_mcangle_it 7.265 r_mcangle_other 7.265 r_scangle_other 6.355 r_mcbond_it 4.288
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.686 r_dihedral_angle_3_deg 13.868 r_dihedral_angle_4_deg 13.629 r_long_range_B_refined 10.709 r_long_range_B_other 10.709 r_dihedral_angle_1_deg 8.41 r_mcangle_it 7.265 r_mcangle_other 7.265 r_scangle_other 6.355 r_mcbond_it 4.288 r_mcbond_other 4.287 r_scbond_it 3.747 r_scbond_other 3.747 r_angle_other_deg 1.234 r_angle_refined_deg 1.162 r_chiral_restr 0.064 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details Blot force = 3s
Wait time = 15s
Drain time = 0s
Blot time = 2.5 to 3 s Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details Blot force = 3s
Wait time = 15s
Drain time = 0s
Blot time = 2.5 to 3 s
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 91056 Reported Resolution (Å) 3.1 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 42.1
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TECNAI F30 Minimum Defocus (nm) 800 Maximum Defocus (nm) 2500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.26 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification 31000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION Gautomatch IMAGE ACQUISITION Leginon CTF CORRECTION Gctf INITIAL EULER ASSIGNMENT RELION FINAL EULER ASSIGNMENT RELION CLASSIFICATION RELION
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 1240275