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Structure of Aedes aegypti OBP22 in the complex with benzaldehyde
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other OBP22 structure solved by tantalum SAD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 277 2M Ammonium sulfate, 0.1 M sodium citrate, 0.2M sodium potassium tartrate
Crystal Properties Matthews coefficient Solvent content 4.61 73.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.934 α = 90 b = 86.934 β = 90 c = 58.515 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CMOS RDI CMOS_8M Rosenbaum-Rock monochromator 2013-09-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 4.2.2 1.0 ALS 4.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 35 99.69 0.01588 0.02246 0.01588 1 25.63 2 40781 30.72
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.968 99.85 0.2494 0.3528 0.2494 0.889 3.16 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT OBP22 structure solved by tantalum SAD 1.9 35 18421 1997 99.57 0.18464 0.18294 0.1829 0.20013 0.2003 RANDOM 35.491
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.987 r_dihedral_angle_4_deg 22.353 r_dihedral_angle_3_deg 11.661 r_long_range_B_refined 6.585 r_long_range_B_other 6.582 r_dihedral_angle_1_deg 5.327 r_scangle_other 4.973 r_mcangle_it 3.39 r_mcangle_other 3.387 r_scbond_it 3.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.987 r_dihedral_angle_4_deg 22.353 r_dihedral_angle_3_deg 11.661 r_long_range_B_refined 6.585 r_long_range_B_other 6.582 r_dihedral_angle_1_deg 5.327 r_scangle_other 4.973 r_mcangle_it 3.39 r_mcangle_other 3.387 r_scbond_it 3.15 r_scbond_other 3.123 r_mcbond_other 2.263 r_mcbond_it 2.26 r_angle_refined_deg 1.132 r_angle_other_deg 0.395 r_chiral_restr 0.059 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 990 Nucleic Acid Atoms Solvent Atoms 110 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHENIX phasing