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Crystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6O6S
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 10% PEG 8K, 0.2 M NaCl, 0.1 M
Na/K phosphate pH 6.2
Crystal Properties Matthews coefficient Solvent content 2.82 56.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.406 α = 90 b = 111.456 β = 110.01 c = 113.138 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2019-04-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.9791 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 98.4 12.8 6.9 55240
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6O6S 2.8 49.41 49778 5441 98.7 0.219 0.214 0.2149 0.257 0.2558 RANDOM 79.77
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.48 0.3 -2.15 5.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.128 r_dihedral_angle_4_deg 17.4 r_dihedral_angle_3_deg 16.863 r_dihedral_angle_1_deg 6.705 r_long_range_B_refined 6.119 r_long_range_B_other 6.119 r_mcangle_it 3.555 r_mcangle_other 3.555 r_scangle_other 3.412 r_mcbond_it 2.034
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.128 r_dihedral_angle_4_deg 17.4 r_dihedral_angle_3_deg 16.863 r_dihedral_angle_1_deg 6.705 r_long_range_B_refined 6.119 r_long_range_B_other 6.119 r_mcangle_it 3.555 r_mcangle_other 3.555 r_scangle_other 3.412 r_mcbond_it 2.034 r_mcbond_other 2.034 r_scbond_it 1.902 r_scbond_other 1.902 r_angle_refined_deg 1.324 r_angle_other_deg 1.062 r_chiral_restr 0.071 r_gen_planes_refined 0.003 r_bond_refined_d 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13780 Nucleic Acid Atoms 272 Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing