☰ Navigation Tabs
Structure of Aedes aegypti OBP22 in the complex with benzaldehyde
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 277 2M Ammonium sulfate, 0.1 M sodium citrate, 0.2M sodium potassium tartrate
Crystal Properties Matthews coefficient Solvent content 4.79 74.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.76 α = 90 b = 87.76 β = 90 c = 59.63 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CMOS RDI CMOS_8M Rosenbaum-Rock monochromator 2013-09-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 4.2.2 1.254 ALS 4.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.59 25 99.44 0.06703 0.09479 0.06703 0.983 27.32 2 8456 56.58
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.591 2.684 96.85 0.2885 0.408 0.2885 0.828 3.23 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.59 25 7614 841 99.44 0.19512 0.19354 0.1952 0.20913 0.2119 RANDOM 52.455
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.57 0.29 0.57 -1.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 45.228 r_dihedral_angle_4_deg 27.481 r_dihedral_angle_3_deg 15.602 r_long_range_B_refined 9.038 r_dihedral_angle_1_deg 5.398 r_mcangle_it 4.855 r_scbond_it 4.791 r_mcbond_it 3.156 r_angle_refined_deg 1.385 r_chiral_restr 0.098
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 45.228 r_dihedral_angle_4_deg 27.481 r_dihedral_angle_3_deg 15.602 r_long_range_B_refined 9.038 r_dihedral_angle_1_deg 5.398 r_mcangle_it 4.855 r_scbond_it 4.791 r_mcbond_it 3.156 r_angle_refined_deg 1.385 r_chiral_restr 0.098 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 970 Nucleic Acid Atoms Solvent Atoms 6 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHENIX phasing