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phosphorylated ERK2 with GDC-0994
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2ERK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 293 36% PEG3350, 100mM bicine pH 9.0
Crystal Properties Matthews coefficient Solvent content 2.99 58.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.07 α = 90 b = 76.93 β = 90 c = 151.76 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ osmic confocal mirrors 2012-03-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 30 88.9 0.069 7.8 5.9 17814
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.53 69.4 0.294 0.319 0.121 6.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2ERK 2.4 26.59 16861 904 88.67 0.19536 0.19291 0.2023 0.24287 0.2477 RANDOM 55.747
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.19 3.13 -3.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.697 r_dihedral_angle_4_deg 19.817 r_dihedral_angle_3_deg 16.903 r_long_range_B_refined 8.72 r_long_range_B_other 8.548 r_scangle_other 7.146 r_dihedral_angle_1_deg 6.878 r_mcangle_it 5.979 r_mcangle_other 5.979 r_scbond_it 4.909
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.697 r_dihedral_angle_4_deg 19.817 r_dihedral_angle_3_deg 16.903 r_long_range_B_refined 8.72 r_long_range_B_other 8.548 r_scangle_other 7.146 r_dihedral_angle_1_deg 6.878 r_mcangle_it 5.979 r_mcangle_other 5.979 r_scbond_it 4.909 r_scbond_other 4.839 r_mcbond_it 4.296 r_mcbond_other 4.292 r_angle_refined_deg 1.616 r_angle_other_deg 1.201 r_chiral_restr 0.066 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2854 Nucleic Acid Atoms Solvent Atoms 17 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling PHASER phasing