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Structure of Aedes aegypti OBP22 in the complex with arachidic acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other OBP22 structure slved by tantalum SAD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.8 291 1.55M ammonium sulfate, 0.1M citric acid, 0.5M sodium chloride
Crystal Properties Matthews coefficient Solvent content 3.14 60.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 154.259 α = 90 b = 154.259 β = 90 c = 58.043 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 X 200K-A VariMax Cu-HF 2018-08-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 38.56 99.91 0.04284 0.04836 0.02153 0.999 30.17 3.2 102184 23.22
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.072 99.62 0.1576 0.2089 0.1356 0.916 6.42 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT OBP22 structure slved by tantalum SAD 2 38.56 97388 5022 98.14 0.17847 0.17647 0.1786 0.2178 0.2171 RANDOM 28.715
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.67 0.67 -1.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.869 r_dihedral_angle_4_deg 22.916 r_dihedral_angle_3_deg 15.411 r_dihedral_angle_1_deg 5.905 r_long_range_B_refined 3.56 r_long_range_B_other 3.552 r_scangle_other 2.272 r_mcangle_it 2.215 r_mcangle_other 2.214 r_scbond_it 1.427
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.869 r_dihedral_angle_4_deg 22.916 r_dihedral_angle_3_deg 15.411 r_dihedral_angle_1_deg 5.905 r_long_range_B_refined 3.56 r_long_range_B_other 3.552 r_scangle_other 2.272 r_mcangle_it 2.215 r_mcangle_other 2.214 r_scbond_it 1.427 r_scbond_other 1.426 r_mcbond_it 1.412 r_mcbond_other 1.411 r_angle_refined_deg 0.995 r_angle_other_deg 0.357 r_chiral_restr 0.05 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8749 Nucleic Acid Atoms Solvent Atoms 165 Heterogen Atoms 70
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling PHASER phasing