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Dehaloperoxidase B in complex with substrate 4-Cl-cresol
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 MPEG 2000, ammonium sulphate, sodium cacodylate
Crystal Properties Matthews coefficient Solvent content 2.18 43.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.234 α = 90 b = 68.025 β = 90 c = 66.761 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX300-HS 2019-02-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-BM 1.00 APS 22-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 47.65 97.88 0.099 0.051 0.988 17.6 3.5 40677 1.5 13.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.54 82.41 0.47 0.282 0.751 1.85 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 47.65 40677 2209 97.88 0.13154 0.12875 0.1288 0.18284 0.1832 RANDOM 15.315
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.27 0.53 -0.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.914 r_dihedral_angle_4_deg 21.674 r_dihedral_angle_3_deg 16.442 r_dihedral_angle_1_deg 5.475 r_long_range_B_refined 3.342 r_long_range_B_other 3.146 r_scangle_other 3.01 r_scbond_other 2.622 r_scbond_it 2.621 r_rigid_bond_restr 2.285
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.914 r_dihedral_angle_4_deg 21.674 r_dihedral_angle_3_deg 16.442 r_dihedral_angle_1_deg 5.475 r_long_range_B_refined 3.342 r_long_range_B_other 3.146 r_scangle_other 3.01 r_scbond_other 2.622 r_scbond_it 2.621 r_rigid_bond_restr 2.285 r_mcangle_other 2.237 r_mcangle_it 2.236 r_angle_refined_deg 1.847 r_mcbond_it 1.817 r_mcbond_other 1.816 r_angle_other_deg 1.624 r_chiral_restr 0.095 r_bond_refined_d 0.012 r_gen_planes_refined 0.011 r_gen_planes_other 0.007 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2159 Nucleic Acid Atoms Solvent Atoms 267 Heterogen Atoms 142
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling PHASER phasing