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Structure of a haemophore from Haemophilus haemolyticus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 291 0.1 M sodium acetate trihydrate pH 4.5, 2 M ammonium sulfate, 30 mM sodium phosphate, 72 mM NaCl
Crystal Properties Matthews coefficient Solvent content 4.28 71.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.043 α = 90 b = 91.043 β = 90 c = 97.484 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2017-11-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 1.45866, 0.95372 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 45.52 100 0.069 0.073 0.023 1 23.2 20 62031
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 100 0.79 0.82 0.25 0.909 4 21
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.6 41.49 58934 3056 99.99 0.17186 0.17122 0.1827 0.18449 0.192 RANDOM 27.667
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.01 -0.02 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.928 r_dihedral_angle_4_deg 19.193 r_dihedral_angle_3_deg 11.958 r_dihedral_angle_1_deg 7.008 r_long_range_B_refined 5.771 r_long_range_B_other 5.77 r_scangle_other 4.642 r_scbond_it 3.031 r_scbond_other 3.029 r_mcangle_it 2.571
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.928 r_dihedral_angle_4_deg 19.193 r_dihedral_angle_3_deg 11.958 r_dihedral_angle_1_deg 7.008 r_long_range_B_refined 5.771 r_long_range_B_other 5.77 r_scangle_other 4.642 r_scbond_it 3.031 r_scbond_other 3.029 r_mcangle_it 2.571 r_mcangle_other 2.556 r_mcbond_it 1.822 r_mcbond_other 1.811 r_angle_refined_deg 1.453 r_angle_other_deg 0.484 r_chiral_restr 0.074 r_bond_refined_d 0.008 r_gen_planes_refined 0.008 r_gen_planes_other 0.007 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1915 Nucleic Acid Atoms Solvent Atoms 170 Heterogen Atoms 84
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing PARROT phasing BUCCANEER model building Coot model building Blu-Ice data collection